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Pull requests: virtualcell/vcell

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Pull requests list

Migrate parameter estimation to Quarkus REST with database-backed job tracking
#1659 opened Apr 8, 2026 by jcschaff Member Loading…
6 of 8 tasks
1
6
Partial upgrade of libsedml, fixed cli plot bugs
#1627 opened Jan 30, 2026 by CodeByDrescher Contributor Loading…
1
VCell Help Updates
#1613 opened Jan 6, 2026 by CodeByDrescher Contributor Loading…
Vcinfo container resource
#1610 opened Dec 22, 2025 by Ezequiel-Valencia Contributor Loading…
Documentation for VCell 7.8
#1600 opened Dec 1, 2025 by jcschaff Member Loading…
@jcschaff
1
import BNGL model without scaling
#1567 opened Jul 30, 2025 by jcschaff Member Loading…
1
@jcschaff
1
support for local field data and SBML I/O in libvcell
#1475 opened Apr 9, 2025 by jcschaff Member Loading…
@jcschaff
Upgraded Solver Handler and fixed bugs in CLI Container
#1447 opened Mar 4, 2025 by CodeByDrescher Contributor Loading…
Updating cicd for cli
#1348 opened Sep 6, 2024 by CodeByDrescher Contributor Loading…
Fixed a number of issues, all revolving around VCell locking up under the right (wrong) conditions
#1332 opened Jul 26, 2024 by CodeByDrescher Contributor Loading…
1
Postgresql migration
#1282 opened Jun 21, 2024 by jcschaff Member Loading…
@jcschaff
update all vcell-solvers and langevin solver
#1269 opened May 30, 2024 by jcschaff Member Loading…
@jcschaff
fix K8s CI - wrong path
#1233 opened Apr 30, 2024 by jcschaff Member Loading…
@jcschaff
Bump cryptography from 41.0.4 to 42.0.4 in /docker/swarm/vcell-admin Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1160 opened Feb 21, 2024 by dependabot bot Loading…
Bump pillow from 10.0.1 to 10.2.0 in /pythonCopasiOpt/vcell-opt Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1112 opened Jan 22, 2024 by dependabot bot Loading…
Bump pillow from 10.0.1 to 10.2.0 in /vcell-cli-utils Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1111 opened Jan 22, 2024 by dependabot bot Loading…
Bump pillow from 10.0.0 to 10.2.0 in /pythonVtk Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1110 opened Jan 22, 2024 by dependabot bot Loading…
Bump jinja2 from 3.1.2 to 3.1.3 in /pythonCopasiOpt/vcell-opt Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1104 opened Jan 11, 2024 by dependabot bot Loading…
Bump fonttools from 4.41.1 to 4.43.0 in /pythonVtk Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1100 opened Jan 9, 2024 by dependabot bot Loading…
Bump fonttools from 4.39.3 to 4.43.0 in /vcell-cli-utils Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1099 opened Jan 9, 2024 by dependabot bot Loading…
Bump fonttools from 4.38.0 to 4.43.0 in /pythonCopasiOpt/vcell-opt Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1098 opened Jan 9, 2024 by dependabot bot Loading…
Bump paramiko from 2.11.0 to 3.4.0 in /docker/swarm/vcell-admin Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1086 opened Dec 19, 2023 by dependabot bot Loading…
Recursive dependency linking
#1073 opened Dec 7, 2023 by CodeByDrescher Contributor Loading…
@CodeByDrescher
3
Bump jupyter-server from 2.7.2 to 2.11.2 in /pythonCopasiOpt/vcell-opt Dependencies Pull requests that update a dependency file Python-based Pull requests that update Python code
#1070 opened Dec 5, 2023 by dependabot bot Loading…
Added appropriate exception catching for SBML errors when exproting to SEDML.
#937 opened Jul 11, 2023 by CodeByDrescher Contributor Loading…
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