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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. distributions distributions Public

    Makefile 5 11

  2. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 30

  3. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 81 repositories
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 2 7 1 Updated Apr 8, 2026
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 11 5 3 Updated Apr 8, 2026
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Apr 8, 2026
  • q2-taxa Public
    qiime2/q2-taxa’s past year of commit activity
    Python 3 BSD-3-Clause 31 43 1 Updated Apr 7, 2026
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 3 2 Updated Apr 7, 2026
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 3 2 1 Updated Apr 7, 2026
  • homepage Public

    QIIME 2 Homepage

    qiime2/homepage’s past year of commit activity
    Astro 0 MIT 0 0 2 Updated Apr 7, 2026
  • q2-boots Public

    q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

    qiime2/q2-boots’s past year of commit activity
    Python 3 BSD-3-Clause 7 10 3 Updated Apr 6, 2026
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 1 2 6 0 Updated Apr 4, 2026
  • q2-fmt Public

    q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!

    qiime2/q2-fmt’s past year of commit activity
    Python 6 BSD-3-Clause 10 7 1 Updated Mar 31, 2026

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