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Add CLAUDE.md and initial .deepreview rule suite#2

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Add CLAUDE.md and initial .deepreview rule suite#2
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@nhorton nhorton commented Apr 8, 2026

Summary

  • Adds CLAUDE.md with end-to-end flow documentation, the three state files crossing process boundaries (action.yml ↔ prompts/review.txt ↔ post-review-comments.py), the self-trigger guard, and how to test changes — so future Claude Code instances ramp up fast in this repo.
  • Adds .deepreview with four review rules so this repo dogfoods the action it ships:
    • prompt_best_practices — reviews CLAUDE.md and prompts/review.txt against Anthropic prompt-engineering best practices.
    • update_action_surface_docs — keeps README.md and CLAUDE.md in sync with action.yml, prompts/review.txt, scripts/post-review-comments.py, and .github/workflows/example.yml. Instructions enumerate 12 concrete drift points rather than vague "look for inaccuracies".
    • python_code_review — reviews Python files against .deepwork/review/python_conventions.md (extracted from post-review-comments.py's observable patterns), with required DRY and comment-accuracy checks.
    • suggest_new_reviews — meta-rule that proposes new review rules per changeset.
  • Gitignores .deepwork/tmp/ (restored from GitHub Actions cache at runtime, regenerated by every /review run — not source).

Design notes

  • README and CLAUDE.md share an identical 4-file dependency surface, so they're covered by one combined doc-update rule rather than two parallel rules with the same triggers (avoids spawning two reviewer agents on every change).
  • The Python rule was added per request even though there's only one Python file in the repo — python_conventions.md reflects patterns observable in the existing code rather than a generic style guide.

Known issue surfaced

The DeepSchema PostToolUse hook for **/.deepreview reports File is not valid JSON: Expecting value: line 1 column 1 (char 0) on every Write/Edit. The file is valid YAML and conforms to deepreview_schema.json — the validator appears to be calling json.loads() on a YAML file. False positive, file lands on disk correctly. Reported separately.

Test plan

  • Open this PR and confirm the action runs against itself
  • Verify update_action_surface_docs triggers on changes to any of its 6 match patterns
  • Verify python_code_review triggers on scripts/post-review-comments.py changes
  • Confirm suggest_new_reviews produces an empty (or near-empty) suggestion list on this initial run
  • Confirm .deepwork/tmp/ is correctly excluded from the commit history going forward

🤖 Generated with Claude Code

nhorton and others added 2 commits April 8, 2026 17:33
Adds project guidance for future Claude Code instances and configures four
DeepWork review rules so this repo dogfoods the action it ships:

- prompt_best_practices — reviews CLAUDE.md and prompts/review.txt against
  Anthropic prompt-engineering best practices.
- update_action_surface_docs — keeps README.md and CLAUDE.md in sync with
  action.yml, prompts/review.txt, scripts/post-review-comments.py, and
  the example workflow. Instructions enumerate 12 high-risk drift points
  (inputs table, end-to-end flow steps, embedded example workflow, security
  claims, caching path, comment grouping, no-commit guarantees, state-files
  JSON schema, bot-identity literal, repo layout, etc).
- python_code_review — reviews scripts/post-review-comments.py against
  conventions extracted from the existing code (.deepwork/review/python_conventions.md),
  with required DRY and comment-accuracy checks.
- suggest_new_reviews — meta-rule that proposes new review rules per change.

Also gitignores .deepwork/tmp/ since it's restored from GitHub Actions cache
at runtime and regenerated by every /review run.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Expand the "Versioning the action" section to explicitly document that v1 is
a floating major-version tag that always points at the latest commit on main
(standard GitHub Actions convention, e.g. actions/checkout@v4). Flags that
release automation is planned and until then v1 must be force-moved manually
on every merge to main.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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🤖 DeepWork automated review applied changes to 5 file(s).

Review the inline comments below for details on each change.

@Unsupervisedcom Unsupervisedcom deleted a comment from github-actions bot Apr 9, 2026
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The previous action.yml was wired to anthropics/claude-code-base-action@beta
with plugin_marketplaces/plugins/claude_args inputs that never existed on
that action — in any published release. At runtime those inputs were
silently dropped, so the DeepWork plugin was never installed, --model and
--dangerously-skip-permissions were never applied, and Claude was running
the built-in /review slash command on default Sonnet with default
permissions. The "review" was plain Claude freelancing with no .deepreview
rule awareness.

Switch to anthropics/claude-code-action@v1, which:
- has real plugins: and plugin_marketplaces: inputs (newline-separated
  lists) documented in its action.yml
- has claude_args: for passing --model / --max-turns / etc.
- commits and pushes file edits back to the PR branch natively via
  use_commit_signing: false
- provides mcp__github_inline_comment__create_inline_comment as a native
  MCP tool, replacing the custom post-review-comments.py
- supports track_progress: true for a live progress comment on the PR
- has a floating v1 tag maintained by upstream

As a result this PR deletes a lot:
- scripts/post-review-comments.py (202 lines of diff-and-post logic)
- the Install uv composite step (dead code — nothing used uv)
- the Fetch base branch for git diff step (claude-code-action handles
  diffing itself)
- the Prepare review run step (no more /tmp/deepwork_changes.json contract)
- the Commit and push changes step (claude-code-action commits natively)
- the Post inline PR review comments step (native MCP tool)

prompts/review.txt loses the /tmp/deepwork_changes.json tracking schema
and gains instructions to use the native inline-comment MCP tool with
confirmed: true.

.github/workflows/example.yml simplifies: shallow fetch-depth: 1,
id-token: write permission for OIDC, drops the misconfigured
`if: github.actor != 'deepwork-action[bot]'` self-trigger guard
(GITHUB_TOKEN-pushed commits don't retrigger workflows per GitHub's
built-in rule — the guard was both wrong and unnecessary).

CLAUDE.md and README.md are rewritten to describe the new thin
architecture. The .deepreview rule update_action_surface_docs has its
drift-check list updated to pin the new contract (plugins,
plugin_marketplaces, bot_name, claude_args, etc.) instead of the deleted
contract (load_changes_by_file, /tmp/deepwork_changes.json schema, etc).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@nhorton nhorton force-pushed the add-deepreview-rules branch from 7ae4379 to a10cd5f Compare April 9, 2026 00:41
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🤖 DeepWork automated review applied changes to 9 file(s).

Review the inline comments below for details on each change.

The previous self-review loop couldn't test action.yml edits: the only
workflow (.github/workflows/example.yml) pinned
`uses: Unsupervisedcom/deepwork-action@v1`, which resolves to the v1
tag on main — not the PR branch. Every PR just kept running the old
broken base-action composite from main, and committed a fresh
output.txt execution log to the PR branch via the old commit step.

Split the two roles:

- examples/deepwork-review.yml — pristine copy-pasteable reference for
  external consumers. Pins @v1. Lives outside .github/workflows/ so
  GitHub doesn't auto-execute it (it's documentation, not CI).
- .github/workflows/self-review.yml — this repo's own CI.
  `uses: ./` so the PR branch's own action.yml is exercised. This is
  how action.yml edits actually get tested before being tagged.

README now links to examples/deepwork-review.yml. CLAUDE.md Repository
Layout and Testing Changes sections are updated to explain the split.
.deepreview's update_action_surface_docs rule now tracks
examples/deepwork-review.yml instead of the old .github path.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@nhorton nhorton force-pushed the add-deepreview-rules branch from fa59066 to b751619 Compare April 9, 2026 00:45
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Claude encountered an error —— View job


DeepWork Review

  • Gather context and read changed files
  • Run /review with .deepreview rules (3 review agents dispatched)
  • Apply review findings (6 findings in prompts/review.txt, peripheral fixes in python_conventions.md, .gitignore, CLAUDE.md)
  • Re-run review to verify clean
  • Post summary

Changes applied:

  1. prompts/review.txt — Added false-positive escape valve to rule 2; added two-cycle convergence limit to rule 3; added rule 5 prohibiting git write commands; strengthened "Commits and pushes" section with prohibitive language; added clarifying note about COMMIT MESSAGE FOR AUTO-FIXES header; added example inline comment format
  2. CLAUDE.md — Updated prompt contract section to reflect strengthened rules
  3. .deepwork/review/python_conventions.md — Removed stale references to deleted scripts/post-review-comments.py
  4. .gitignore — Generalized scripts/__pycache__/__pycache__/

First real run of claude-code-action@v1 from the PR branch got blocked
on both permissions and turn budget:

- The upstream action configures a read-only allowedTools list for
  pull_request events (Glob, Grep, LS, Read, git add/commit/push,
  update_claude_comment, CI tools). No Edit/Write/MultiEdit/Task or
  mcp__github_inline_comment__create_inline_comment. Claude tried to
  edit files, hit permission_denials_count: 2, and burned turns fighting
  denials. Pass --dangerously-skip-permissions via claude_args to
  bypass the allowlist — this now actually works because the real
  claude-code-action (unlike the base action) accepts claude_args.

- Hit error_max_turns at 51 turns. DeepWork /review dispatches parallel
  sub-agent Tasks for each rule, and each reviewer eats turn budget.
  Default max_turns=50 is tight for multi-rule repos. Bump to 100.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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github-actions bot commented Apr 9, 2026

Claude finished @nhorton's task in 8m 55s —— View job


DeepWork Review

  • Gather context and read changed files
  • Run /review with .deepreview rules (4 review agents dispatched)
  • Apply review findings (12abc1f — 5 files, 41 insertions, 30 deletions)
  • Re-run review to verify clean (cycle 2: 1 new issue found and fixed in a914139)
  • Post summary

Changes applied across 2 commits:

File Changes
prompts/review.txt Added false-positive escape valve to rule 2; added 2-cycle convergence limit to rule 3; added rule 5 prohibiting git write commands; added example inline comment format; strengthened commits/pushes section with back-reference to rule 5
CLAUDE.md Documented --dangerously-skip-permissions in end-to-end flow (drift point 8); updated prompt contract from 4 → 5 guarantees to reflect strengthened rules
.deepwork/review/python_conventions.md Removed all stale references to deleted scripts/post-review-comments.py and its functions
.deepreview Fixed stale "change-tracking JSON contract" reference → "inline-comment posting instructions"; added tool-unavailable fallback to suggest_new_reviews; updated drift check #12 from 4 → 5 guarantees with new check (e)
.gitignore Generalized scripts/__pycache__/__pycache__/ (scripts dir was deleted)

Review results by rule:

  • prompt_best_practices — 3 High, 5 Medium, 3 Low findings. All High/Medium applied; Low findings (output channel ambiguity, priority signaling, tool fallback) addressed where actionable.
  • update_action_surface_docs — 11/12 drift points PASS on first run. 1 FAIL (CLAUDE.md missing --dangerously-skip-permissions) fixed. Clean on re-run.
  • python_code_review — No Python files in repo. Stale python_conventions.md references cleaned up.
  • suggest_new_reviews — No new rules warranted. Existing 4 rules provide sufficient coverage.

github-actions bot and others added 2 commits April 9, 2026 01:06
- prompts/review.txt: Add false-positive escape valve to rule 2; add
  two-cycle convergence limit to rule 3; add rule 5 prohibiting git
  write commands; add example inline comment format; strengthen
  commits/pushes section
- CLAUDE.md: Document --dangerously-skip-permissions in end-to-end flow;
  update prompt contract to reflect strengthened rules
- .deepwork/review/python_conventions.md: Remove stale references to
  deleted scripts/post-review-comments.py
- .deepreview: Fix stale "change-tracking JSON contract" reference;
  add tool-unavailable fallback to suggest_new_reviews
- .gitignore: Generalize scripts/__pycache__/ to __pycache__/

Co-authored-by: Noah Horton <undefined@users.noreply.github.com>
The previous commit added a 5th guarantee to CLAUDE.md's prompt contract
section but did not update the .deepreview drift check that counts them.

Co-authored-by: Noah Horton <undefined@users.noreply.github.com>
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The first successful claude-code-action@v1 run made substantive autofix
commits but never invoked mcp__github_inline_comment__create_inline_comment
— or if it did, the comments never appeared on the PR. The upstream
action's SDK wrapper hides Claude's tool calls by default
(show_full_output=false) and buffers/classifies inline comments before
posting them (classify_inline_comments=true), so we can't tell which
path is at fault from the log alone.

Flip both while we diagnose:
- show_full_output: true — exposes Claude SDK tool calls in the runner
  log. WARNING: may expose secrets in tool output; only safe in trusted
  repos. Revert to false once the inline-comment path is working.
- classify_inline_comments: false — post every inline comment Claude
  creates instead of buffering and classifying real-vs-probe. This
  rules out the classifier dropping them silently.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Claude finished @nhorton's task in 7m 50s —— View job


DeepWork Review

  • Gather context and read changed files
  • Run /review with .deepreview rules (3 review agents dispatched)
  • Apply review findings (5 changes to prompts/review.txt, 1 to CLAUDE.md)
  • Re-run review to verify clean (cycle 2: all PASS)
  • Post summary

Changes applied:

File Changes
prompts/review.txt Tightened false-positive exception to closed enumeration (bug/test failure or contradicting finding only); clarified "cycle" = one review pass + applying fixes, capped at 2; expanded git deny-list with 6 additional commands (rebase, merge, cherry-pick, clean, stash, rm, mv); added tool-name fallback for inline comment MCP tool; added "When the review is done" terminal instruction section
CLAUDE.md Documented show_full_output: true and classify_inline_comments: false debug flags in end-to-end flow section

Review results by rule:

  • prompt_best_practices — 1 High, 3 Medium, 3 Low findings in prompts/review.txt. All High/Medium applied. Low findings: bare /review line (informational, no change needed), "Commits and pushes" redundancy (acceptable reinforcement), terminal output format (applied). python_conventions.md PASS. Clean on cycle 2.
  • update_action_surface_docs — 11/12 drift points PASS on cycle 1. 1 FAIL (CLAUDE.md missing debug flag docs) fixed. All 12 PASS on cycle 2.
  • suggest_new_reviews — No new rules warranted. Existing 4 rules provide sufficient coverage.

The previous prompt rule 5 ("NEVER run git write commands — the wrapping
GitHub Action handles all VCS operations") was based on a wrong mental
model of anthropics/claude-code-action@v1. That action does NOT
auto-commit; it pre-allows a small set of git tools and the upstream
system prompt expects Claude to commit and push itself. Our rule 5 told
Claude not to, so the most recent run made file edits, reported them as
"applied" in the tracking comment, and never persisted them to the branch.

Reverse it: Claude MUST commit and push using
- git add <files>
- git commit -m "<message>"
- /home/runner/work/_actions/anthropics/claude-code-action/v1/scripts/git-push.sh origin HEAD

Other changes in the same prompt rewrite:
- Drop the entire "Posting inline PR comments" section. The upstream
  claude-code-action@v1 system prompt explicitly forbids creating new
  PR comments on pull_request events ("Never create new comments. Only
  update the existing comment using mcp__github_comment__update_claude_comment")
  — our prompt was fighting it. The mcp__github_inline_comment server
  isn't loaded in this action's context anyway. Lean into the tracking
  comment as the sole output surface.
- Add a new "Reporting your work" section instructing Claude to use the
  upstream-managed tracking comment for per-rule findings and commit SHAs.

action.yml: revert show_full_output and classify_inline_comments debug
flags to upstream defaults. show_full_output=true was leaking secrets
into public runner logs.

README.md and CLAUDE.md: rewrite "Review Comments"/"How It Works" to
describe the tracking-comment-only output surface and Claude's commit
responsibility. Add a "Known issues" section to CLAUDE.md documenting
the DeepWork plugin MCP server failing to start in the action's runner
(plugin installs successfully but MCP server reports status: failed).
Also document the PR file restoration security feature.

.deepreview: update update_action_surface_docs drift checks #6 and #12
to reflect the new contract (single tracking comment, no inline; Claude
commits via git tools, no "never run git" rule).

.claude/settings.json: commit the plugin-enabled settings file generated
by /plugin so the claude-code-action runner sees enabledPlugins after
the file restoration step. Speculative MCP-loading fix; backed up by
a research agent dispatched in parallel.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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github-actions bot commented Apr 9, 2026

DeepWork Review

  • Gather context and read changed files
  • Run /review with .deepreview rules (4 review agents dispatched)
  • Apply review findings (fixing stale mcp__github_inline_comment__create_inline_comment references in CLAUDE.md, adding push-script fallback and summary template to review.txt)
  • Re-run review to verify clean (cycle 2)
  • Post summary

View job run

Capture the full investigation of the DeepWork plugin MCP server failing
to start inside anthropics/claude-code-action@v1, including:

- Symptom (plugin install reports success; mcp_servers init payload
  reports plugin:deepwork:deepwork status: failed; silent, no error
  message; same plugin works fine outside CI).
- Why slash commands still work (/review is a skill file, no MCP needed)
  vs. what's missing (get_configured_reviews, mark_review_as_passed,
  start_workflow, DeepSchema validation, the workflow state machine).
- Root-cause hypotheses ranked by probability:
  1. 70% — PR file restoration wipes plugin MCP registration
  2. 60% — No automatic plugin → session MCP merge path
  3. 30% — MCP_TIMEOUT/MCP_TOOL_TIMEOUT empty env vars
- Three open upstream issues that match our exact symptoms:
  - anthropics/claude-code-action#813 (silent MCP failures)
  - anthropics/claude-code-action#1004 (--mcp-config silently dropped)
  - anthropics/claude-code-action#95 (no plugin → session MCP merge path)
- Definitive diagnostic experiment to confirm root cause #1.
- Speculative fix logic for the .claude/settings.json file added in the
  rule-5 reversal commit (enables plugin at project scope; only effective
  for PRs opened after the file lands on main, because PR file restoration
  pulls from origin/main).
- BLOCKING status: PR parked as draft until upstream fixes land.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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github-actions bot commented Apr 9, 2026

Claude Code is working…

I'll analyze this and get back to you.

View job run

@nhorton nhorton marked this pull request as draft April 9, 2026 02:18
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nhorton commented Apr 9, 2026

Parking this PR as draft — blocked on upstream MCP issues

The action ran end-to-end successfully in cycles 4 and 5 of this PR (commit 12abc1f produced real autofix commits via claude-code-action@v1), but full investigation has surfaced a blocking upstream issue: the DeepWork plugin's MCP server fails to start inside anthropics/claude-code-action@v1's GitHub Actions runner. Until that's fixed upstream, this action only delivers a degraded review (slash-command-only, no MCP-backed quality gates), so the PR is going back into draft.

Symptom

anthropics/claude-code-action@v1 installs the plugin successfully:

✔ Successfully installed plugin: deepwork@deepwork-plugins (scope: user)
✓ Successfully installed: deepwork@deepwork-plugins

…but the Claude Code session init payload reports the plugin's MCP server as failed, while the two GitHub MCPs that ship with claude-code-action connect fine:

```json
"mcp_servers": [
{ "name": "plugin:deepwork:deepwork", "status": "failed" },
{ "name": "github_comment", "status": "connected" },
{ "name": "github_ci", "status": "connected" }
]
```

Silent failure — no stack trace, no `command not found`, no `could not start`. The same plugin works fine outside CI.

What still works vs what's missing

/review is implemented as a skill file (prompt-style, no MCP needed) so reviews still run and produce file edits — that's why we got real autofix commits earlier. What's missing in CI is everything that depends on actual MCP tool calls:

  • mcp__plugin_deepwork_deepwork__get_configured_reviews
  • mcp__plugin_deepwork_deepwork__get_named_schemas
  • mcp__plugin_deepwork_deepwork__start_workflow
  • mcp__plugin_deepwork_deepwork__mark_review_as_passed
  • mcp__plugin_deepwork_deepwork__register_session_job
  • DeepSchema validation tools
  • The workflow state machine and per-step quality reviewers

So the CI reviews running today are a degraded form: file-edit-based, no quality gates, no DeepSchema validation, no orchestrated workflow. They produce useful autofixes but skip all the structural-integrity guarantees that are the whole point of DeepWork.

Root-cause hypotheses (ranked by probability)

# Hypothesis Probability
1 PR file restoration wipes plugin MCP registration. `claude-code-action`'s `pull_request` security path restores `.claude/`, `.mcp.json`, `.claude.json`, `.gitmodules`, `.ripgreprc`, `CLAUDE.md`, `CLAUDE.local.md`, `.husky` from `origin/main` before Claude initializes. The plugin install runs first and writes its MCP registry entry; the restoration step then erases it. The init reports `status: failed` because the entry is gone, not because the MCP itself crashed. Silent because there's no entry to report against. 70%
2 No automatic plugin → session MCP merge path. Plugin packages are installed but their MCP server definitions aren't merged into the MCP config the Claude CLI subprocess reads. Built-in `github_*` MCPs work because `claude-code-action` wires them up explicitly; third-party plugin MCPs have no documented integration path in CI. 60%
3 `MCP_TIMEOUT`/`MCP_TOOL_TIMEOUT` empty env vars. The runner sets both to empty strings rather than to a numeric value or leaving them unset. Empty might be interpreted as `0` (instant timeout) instead of "use default". 30%

Open upstream issues that match exactly

Other findings worth knowing about

  • The upstream `claude-code-action@v1` system prompt explicitly forbids creating new PR comments on `pull_request` events: "Never create new comments. Only update the existing comment using mcp__github_comment__update_claude_comment." The `mcp__github_inline_comment__create_inline_comment` MCP server isn't even loaded in this action's context. So the per-line-inline-comment story is dead with this upstream action — everything goes through the `track_progress: true` tracking comment instead. This is a feature, not a bug, and the rewrite in this PR leans into it.
  • Earlier rule-5 footgun: an earlier draft of `prompts/review.txt` told Claude "NEVER run git write commands — the wrapping action handles all VCS operations", under the (wrong) assumption that `claude-code-action` auto-commits. It does not — it pre-allows `git add`/`git commit`/`git-push.sh` and expects Claude to commit itself. The wrong rule made Claude obediently edit files and then never persist them, while the tracking comment proudly reported "applied". Reversed in commit `ec695df`. Docs in `CLAUDE.md` updated.
  • Speculative pre-positioned fix: the rule-5 reversal commit also added `.claude/settings.json` with `enabledPlugins.deepwork@deepwork-plugins: true`. Theory: the plugin installs at user scope but Claude only loads its MCP if the project enables it. The file can only take effect on PRs opened after it lands on `main` (because the PR file restoration pulls `.claude/` from `origin/main`), so it's pre-positioning, not a fix for this PR.

Status

PR converted to draft until at least one of the upstream issues is resolved (or until we run the diagnostic experiment described in `CLAUDE.md` and submit a targeted upstream PR). Two cancelled runs (`24168751413`, `24168943402`) are because they would have hit the same MCP failure — no point burning more cycles until there's a fix to test.

Full investigation details, the diagnostic experiment, and the rationale for the speculative fix are in the Known issues section of CLAUDE.md.

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