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Remove direct publishes from SmartEM integration #778

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Merged
d-j-hatton merged 1 commit into from
Apr 8, 2026
+0 −18
Merged

Remove direct publishes from SmartEM integration #778

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5 changes: 0 additions & 5 deletions src/murfey/workflows/spa/ctf_estimation.py
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,6 @@
from smartem_backend.api_client import SmartEMAPIClient
from smartem_backend.model.http_request import MicrographUpdateRequest
from smartem_backend.model.http_response import MicrographResponse
from smartem_backend.mq_publisher import publish_ctf_estimation_completed
from smartem_common.entity_status import MicrographStatus

SMARTEM_ACTIVE = True
Expand Down Expand Up @@ -47,10 +46,6 @@ def ctf_estimated(message: dict, murfey_db: Session) -> dict[str, bool]:
update,
MicrographResponse,
)
publish_ctf_estimation_completed(
micrograph_uuid=movie.smartem_uuid,
ctf_max_res=message["ctf_max_resolution"],
)
except Exception:
logger.warning(
"Failed to emit CTF estimation complete event to smartem",
Expand Down
6 changes: 0 additions & 6 deletions src/murfey/workflows/spa/motion_correction.py
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,6 @@
from smartem_backend.api_client import SmartEMAPIClient
from smartem_backend.model.http_request import MicrographUpdateRequest
from smartem_backend.model.http_response import MicrographResponse
from smartem_backend.mq_publisher import publish_motion_correction_completed
from smartem_common.entity_status import MicrographStatus

SMARTEM_ACTIVE = True
Expand Down Expand Up @@ -49,11 +48,6 @@ def motion_corrected(message: dict, murfey_db: Session) -> dict[str, bool]:
update,
MicrographResponse,
)
publish_motion_correction_completed(
micrograph_uuid=movie.smartem_uuid,
total_motion=message["total_motion"],
average_motion=message["average_motion"],
)
except Exception:
logger.warning(
"Failed to emit motion correction complete event to smartem",
Expand Down
7 changes: 0 additions & 7 deletions src/murfey/workflows/spa/picking.py
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Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,6 @@
from smartem_backend.api_client import SmartEMAPIClient
from smartem_backend.model.http_request import MicrographUpdateRequest
from smartem_backend.model.http_response import MicrographResponse
from smartem_backend.mq_publisher import publish_particle_picking_completed
from smartem_common.entity_status import MicrographStatus

SMARTEM_ACTIVE = True
Expand Down Expand Up @@ -465,12 +464,6 @@ def particles_picked(message: dict, murfey_db: Session) -> dict[str, bool]:
update,
MicrographResponse,
)
publish_particle_picking_completed(
micrograph_uuid=movie.smartem_uuid,
number_of_particles_picked=len(
message.get("particle_diameters", [])
),
)
except Exception:
logger.warning(
"Failed to emit particle picking complete event to smartem",
Expand Down
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