Expose count observation process base class; add section to tutorial for custom count observation process#726
Expose count observation process base class; add section to tutorial for custom count observation process#726cdc-mitzimorris wants to merge 34 commits intomainfrom
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@dylanhmorris, @damonbayer - ready for review. |
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@dylanhmorris tagging for myself that this needs review. |
| ## Using the `Counts` class for Hospital Admissions Data | ||
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| For hospital admissions data, we construct a `Counts` observation process. | ||
| The delay is the key mechanism: infections from $s$ days ago ($I(t-s)$) contribute to today's expected hospital admissions ($\mu(t)$) weighted by the probability ($\pi(s)$) that an infection leads to hospitalization after exactly $s$ days. The convolution sums these contributions across all past days. |
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Should now be
| ``` | ||
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| ## Weekly Observations with WeeklyCounts | ||
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Flag at the top that Pyrenew provides helper functions and we'll use them here?
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Thanks @cdc-mitzimorris. A few minor suggestions.
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not going to merge at this time - this work will be redone in future PRs to address #777 |
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Rename the Count observation process base class from
_CountBasetoCountBase- which parallels how the Measurements observation process class is set up.Add a section to tutorial
observation_process_counts.qmdshowing how to extent theCountBaseclass for observation data aggregated to the weekly level. This parallels how the Measurements observation process tutorial defines theWastewaterclass.